Potentials for monitoring gene level biodiversity: using Sweden as an example

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1 Biodivers Conserv (2008) 17: DOI /s SUPPLEMENTARY TABLES AND REFERENCES Potentials for monitoring gene level biodiversity: using Sweden as an example Linda Laikre Lena C. Larsson Anna Palmé Johan Charlier Melanie Josefsson Nils Ryman Reference list S3 Genetic studies of brown trout stocks in Sweden Linda Laikre ( ) Lena C. Larsson Anna Palmé Johan Charlier Nils Ryman Division of Population Genetics, Department of Zoology, Stockholm University, Stockholm, Sweden Linda.Laikre@popgen.su.se Melanie Josefsson Department of Environmental Monitoring and Assessment, Swedish Environmental Protection Agency, P.O. Box 7050, Uppsala, Sweden

3 Reference list S3 Genetic studies of brown trout stocks in Sweden Bernatchez, J., Guyomard, R. & Bonhomme, F DNA sequence variation of the mitochondrial control region geographically and morphologically remote European brown trout Salmo trutta populations. Molecular Ecology, 1: Chakraborty, R., Haag, M., Ryman, N. & Ståhl, G Hierarchical gene diversity analysis and its application to brown trout population data. Hereditas, 97: Dannewitz, J Populationsgenetisk undersökning av Nissanöring uppströms och nedströms dammen i Unnefors. FiskGen, Institute of Freshwater Research, Drottningholm, (In Swedish). Dannewitz, J En populationsgenetisk jämförelse mellan Siljan- och Hansjööring. FiskGen, Institute of Freshwater Research, Drottningholm, (In Swedish). Dannewitz, J. & Bystedt, I Genetisk variation hos lax och öring från Gullspångsälven. FiskGen. Institute of Freshwater Research, Drottningholm, (In Swedish). Dannewitz, J. & Johansson, L En populationsgenetisk studie av öring från Åvaån, Fitunaån och Kagghamraån. FiskGen, Institute of Freshwater Research, Drottningholm, (In Swedish). Dannewitz, J. & Prestegaard, T En utvärdering av utsättningarna i Fjätälven. FiskGen, Institute of Freshwater Research, Drottningholm, (In Swedish). Dannewitz, J., Petersson, E., Prestegaard, T. & Järvi, T Effects of sea-ranching and family background on fitness traits in brown trout Salmo trutta reared under nearnatural conditions. Journal of Applied Ecology, 40: Dannewitz, J., Prestegaard, T. & Bystedt, I Karaktärisering av skyddsvärds öringbestånd i Särna-Idre området samt en utvärdering av romutsättningarna i Fjätälven. FiskGen, Institute of Freshwater Research, Drottningholm, (In Swedish). Gross, R. & Nilsson, J Application of heteroduplex analysis for detecting variation within the growth hormone 2 gene in Salmo trutta L. (brown trout). Heredity. 74: Gyllensten, U. & Wilson, A Mitochondrial DNA of salmonids: inter- and intraspecific variability detected with restriction enzymes. In: Population Genetics and Fishery Management, Ryman, U. & Utter, F. (eds). Washington Sea Grant Publications/University of Washington Press. Seattle and London. Jansson, H Genetisk analys av öring från Tidan. Meddelande 2/1996, Salmon Jansson, H Genetisk analys av Storboströmsöring. Rapport till Indalsälvens Vattenregleringsföretag, Salmon Laikre et al

4 POTENTIALS FOR MONITORING GENE LEVEL BIODIVERSITY: USING SWEDEN AS AN EXAMPLE Jansson, H., Andersson, T., Holmgren, I. & Wedin, K Genetisk variation i de odlade stammarna Bonäshamns-öring och Granbo-öring. Meddelande 3/1995, Salmon Jansson, H. & Öst, T Hybridization between Atlantic salmon (Salmo salar) and brown trout (S. trutta) in a restored section of the river Dalälven, Sweden. Can. J. Fish. Aquat. Sci. 54: Laikre, L Kartläggning av genetisk mångfald hos öring i Värmlands län. En förberedande studie för övervakning av biologisk mångfald på gennivå. Divison of Population Genetics, Stockholm University, (In Swedish). Laikre, L., Prodöhl, P., Jorde, P.E. & Ryman, N Genetic variability at minisatellite and allozyme loci in brown truot (Salmo trutta) A comparison. Hereditas, 123: Nilsson, J Genetisk karakterisering av öring från Bakvattnet, Storån och Toskströmmen. Rapport , Swedish University of Agricultural Sciences, Umeå, (In Swedish). Palm, S. & Ryman, N Genetic basis of phenotypic differences between transplanted stocks of brown trout. Ecology of Freshwater Fish, 8: Palm, S., Dannewitz, J., Järvi, T., Petersson, E., Prestegaard, T. & Ryman, N Lack of molecular genetic divergence between sea-ranched and wild sea trout (Salmo trutta). Molecular Ecology, 12: Ryman, N Conservation of genetic resources: experiences from the brown trout (Salmo trutta). In: Fish gene pools. Ecological Bulletins. Ryman, N. (ed.), Editorial Service, FRN, Stockholm, pp Ryman, N Patterns of distribution of biochemical genetic variation in salmonids: differences between species. Aquaculture, 33: Ryman, N. & Ståhl, G Genetic changes in hatchery stocks of brown trout (Salmo trutta). Can. J. Fish. Aquat. Sci., 37: Ryman, N. & Ståhl, G Genetic perspectives of the identification and conservation of Scandinavian stocks of fish. Canadian Journal of Fisheries and Aquatic Sciences, 38: Ståhl, G. & Ryman, N Genetic analysis of brown trout populations in Lake Lulejaure. Department of Genetics, Stockholm University, Report 1, (In Swedish). Ståhl. G. & Ryman, N Lax och öring i Vänernområdet. En populationsgenetisk analys. Swedish Environmental Protection Agency, Report 3357, (In Swedish). Åkerström, A-K Genetiska förändringar i en odlad öringstam (Salmo trutta). Degree project, Division of Population Genetics, Stockholm University, (In Swedish). 2 Laikre et al. 2008

5 POTENTIALS FOR MONITORING GENE LEVEL BIODIVERSITY: USING SWEDEN AS AN EXAMPLE Öst, T A mtdna study of brown trout in the river Dalälven. Report 27/3, Salmon Research Institute, (In Swedish). Öst, T. & Jansson, H Genetisk analys av Bågedeöring. Rapport till Vattenregleringsföretagen, Salmon Öst, T. & Jansson, H Genetisk undersökning av öring från Gävleborgs län. Rapport till Länsstyrelsen i Gävleborgs län och Sandvikens kommun, Salmon Öst, T. & Jansson, H Genetisk uppföljning av kompensationsodlade lax- och öringstammar. Rapport till Laxforskningsinstitutets intressenter, Salmon Research Institute, Älvkarleby, (In Swedish). Östergren, J Migration and genetic structure of Salmo salar and Salmo trutta in northern Swedish rivers. Doctoral thesis. Department of Aquaculture, Swedish University of Agricultural Sciences, Umeå. Laikre et al

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Potentials for monitoring gene level biodiversity: using Sweden as an example

Biodivers Conserv (2008) 17:893-910 DOI 10.1007/s10531-008-9335-2 SUPPLEMENTARY TABLES AND REFERENCES Potentials for monitoring gene level biodiversity: using Sweden as an example Linda Laikre Lena C.